[[
research:howto:using_the_amber12sb_forcefield
]]
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howto
adaptive_tempering_
amber99sb-ildn_tip4p-ew_and_namd
approaching_norma
backup_backup_backup
calculate_and_plot_frequencies_of_transitions_between_conformers
calculation_of_a_principal_component_s_cosine_content
calculation_of_interaction_energies_using_namd
carma
carma_cookbook
cluster_analysis_of_crossdcd_matrices_using_r
comparing_two_secondary_structure_distributions
comparison_of_carma-derived_clusters_and_rmsd_crossdcd_matrices
distance-matrix-based_clustering_of_pcs
estimating_minimal_pbc_box_for_a_folding_simulation
guide_for_loading_data_to_dx
hd_movies_using_pymol
high_dimensionality_cluster_analysis_based_on_pca
high_dimensionality_cluster_analysis_with_snob
histograms_of_principal_components
md_and_nmr_calculation_of_chemical_shifts
md_and_nmr_calculation_of_j-couplings
md_and_nmr_calculation_of_noes
positional_autocorrelation_function
preparation_of_diagrams_based_on_native_contacts_q_qs_s
preparation_of_distance_vs._rg_plots
preparation_of_energy_vs._surface_area_plots
r_mds_and_friends
rules_of_engagement
submitting_a_cns_job
submitting_a_generic_serial_job_eg._ccp4
submitting_a_mpi_parallel_job
submitting_a_namd_job
submitting_a_vina_autodock_job
torsion-rmsd_calculation_and_applications
using_a_4fs_timestep_through_hydrogen_mass_repartitioning
using_methanol_or_tfe_as_solvent
using_the_amber12sb_and_amber14sb_forcefield
using_the_amber12sb_forcefield
using_the_amber15sb_tip3p-fb_forcefield
using_the_amber_forcefield
using_the_charmm_forcefield_with_the_cmap_correction
using_the_opls-aa_forcefield
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research/howto/using_the_amber12sb_forcefield.txt · Last modified: 2012/08/08 18:06 (external edit)
